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   <div id="projectname">NINJA
   &#160;<span id="projectnumber">2.x</span>
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<div class="title">SequenceFileReader Member List</div>  </div>
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<p>This is the complete list of members for <a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a>, including all inherited members.</p>
<table class="directory">
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#a8cc42e15f26ed4a680ac4b968f0922a7">AlphabetType</a> enum name</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a9318592fe459d2b67d3fb191b1f75057">alphType</a></td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#a8cc42e15f26ed4a680ac4b968f0922a7acae42440ed46d49841a42325c14aaf41">amino</a> enum value</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a8cc42e15f26ed4a680ac4b968f0922a7aeafabf791da5b60629a8c2eea71c9ee1">dna</a> enum value</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#a38d7a5bd2e01b009daa2fa7f0909ed57a04f278c472cd9257e9f801c8094076a2">fasta</a> enum value</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a38d7a5bd2e01b009daa2fa7f0909ed57">fileType</a> enum name</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#a5599fbffb34bd065bfb846947c6e9c41">filetype</a></td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a19cd3893e28924779bfcb74a1cece03b">getAlphType</a>() const</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#a90a7fe721e3311573775ab8f7c946ec9">getNames</a>() const</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#ac6ddf2c86a6e8c25f21d9e1381cb08ce">getSeqs</a>() const</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#ac5ad200019599845c0f1bc226ce0161b">names</a></td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a8cc42e15f26ed4a680ac4b968f0922a7a9388aafb7eda9f884eed4c4dc315cc24">null</a> enum value</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#aac56176cc7a6ed92728a106576ec3382">numSeqs</a></td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a4ed189180afd320f49605425fad1a0d9">seqs</a></td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#afefc977e0ab5e10c56afbf0f2fa2ada8">SequenceFileReader</a>(std::string *filename, AlphabetType alphTypeIn)</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_sequence_file_reader.html#a38d7a5bd2e01b009daa2fa7f0909ed57a71d055fafc2c7e7bda14e4aa68119a9c">stockholm</a> enum value</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_sequence_file_reader.html#a68f93cafb0fff8017a6ddfdac763b2ec">~SequenceFileReader</a>()</td><td class="entry"><a class="el" href="class_sequence_file_reader.html">SequenceFileReader</a></td><td class="entry"></td></tr>
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